How do I get started with BioMate AI?

Register for a free account at biomate.ai/register — no credit card required. Once logged in, describe your analysis in plain English (e.g., 'run RNA-seq differential expression on these 12 samples') and BioMate will suggest the right workflow, pre-fill parameters based on your context, and run the analysis on AWS. Results typically arrive within minutes to hours depending on data size.

Do I need to know bioinformatics to use BioMate?

No. BioMate is designed for wet-lab biologists, clinician-scientists, and research teams who need computational results without writing code or configuring pipelines. You describe your experiment in plain English; BioMate handles tool selection, parameter configuration, execution on AWS, quality assessment, and report generation. Advanced users can inspect and override any parameter.

What file formats does BioMate AI accept?

BioMate AI accepts all common bioinformatics file formats: FASTQ and BAM (sequencing data), VCF (variant calls), FASTA (sequences), PDB and mmCIF (protein structures), MRC and TIFF (cryo-EM micrographs), CSV and TSV (tabular data), and common structure and chemistry formats (SDF, MOL2, SMILES). Files can be uploaded directly or provided as cloud storage paths (AWS S3).

How long do BioMate AI workflows take to run?

Run times depend on workflow complexity and data size. Simple analyses (ADMET profiling, differential expression on 6-10 samples) typically complete in 5–20 minutes. Complex multi-step pipelines (WGS variant calling on 30x coverage, cryo-EM SPA on thousands of micrographs) may take 1–4 hours. All workflows run on AWS Batch with auto-scaling, so compute is not a bottleneck — only data transfer and pipeline execution time.

BioMate AI Tutorials | AI Bioinformatics Workflow Guides

BioMate — The AI Lab Platform for Life Sciences

An overview of BioMate — the AI-native lab platform that turns complex bioinformatics pipelines into a conversation. From raw data to publication-ready outputs, without writing code.

Multi-step Workflow Automation with Quality Control

BioMate runs a CryoSPARC single-particle analysis end to end — 5 phases, 23 steps, live QC gates, auto-loop remediation, and per-step output previews, submitted to AWS Batch GPUs from a single chat message.

After Run Report — Reproducibility in One Click

Every completed BioMate run generates a structured 7-tab report: Findings, Outputs, Methods, Parameters, Software, Citations, and QC Audit. Download as DOCX, Markdown, or LaTeX — manuscript-ready without copy-paste.

IND Report — Automated Section 2.6 Nonclinical Dossier with 21 CFR Part 11 Sign-Off

A five-step pipeline — ADMET profiling, PBPK modeling, lead prioritization, and LLM-generated regulatory prose — builds an IND-quality section 2.6 dossier. The live document panel updates in place as each step completes, with full 21 CFR Part 11 sign-and-freeze.